PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 591aa    MW: 65925.8 Da    PI: 6.512
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-16741135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSMUA_Achr2P18310_001  7 CRHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                           ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-11544No hitNo description
CDDcd002022.41E-15653No hitNo description
PfamPF003203.8E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYVPLHA REFFNSDELK  60
VSKIKSISSK SKEQKLQKNK QSKSTLENEC EIQYYDQNFL KIIEGDVSNR SSSESAISGS  120
ESCVHFGTTD ASDITGSVQS NVEHSLVPSK KRTFTTRPKP SVEKLTKDLY SILHEEQSSN  180
LSRTSDDDLL YESGTPLGSF EIGYGGVLIR HPNSKSVEEE SEASSFPVYK SCITNEDFSG  240
SASLSVNTKS KKRSYLNSGT DPTKSTAPVT QENPKRDLIL NEKLNNLQNW NSCLSYADLN  300
VFINFEVFMK YLTYEEQQRL MKYLPSTDAA NPPESLKSMF TSPQFLDTLS CFQQLFQEGV  360
LDLSFSGANA EECRTVERVA LLNSTNLQWS EFYQDIKGSS SNKKRGNGKL NRQLLPEQKS  420
SMRSPKRVCR SGGMNPPSGY SNQLESSVVS KVTDDTEDFV DHEAACIYSR KIFATAADRS  480
YSLAPKQFIA DSSDDDLLLD MPSSASFPEA ELLYHPWRQI INQNDSPAES GLEASYHPSS  540
SFCVLFATET LTRAASSLSF GMFLVCPCTI HKLVDELFTY LAGRKFLEKL K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388266.10.0PREDICTED: GATA transcription factor 26-like isoform X1
TrEMBLM0S9220.0M0S922_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-80GATA transcription factor 26