PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 41aa    MW: 4838.14 Da    PI: 12.2165
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.45.1e-101139331
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLC 31
                           i n+s r  tf kR+ g++KK + L  LC
  GSMUA_Achr2P18410_001 11 IANDSMRRATFKKRKMGLMKKVNKLAMLC 39
                           89*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.23E-13139IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.451139IPR002100Transcription factor, MADS-box
SMARTSM004320.0072139IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-101139IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 41 aa     Download sequence    Send to blast
MARKKVKLAW IANDSMRRAT FKKRKMGLMK KVNKLAMLCI K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIANDSMRRATFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0S9329e-19M0S932_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18410_0012e-19(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-12AGAMOUS-like 96