PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 245aa    MW: 26910 Da    PI: 8.6679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046426123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           +kC +C ++F++   L  H+r+H
  GSMUA_Achr2P18480_001  4 HKCRICFRRFPSGRALGGHMRSH 26
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-6326No hitNo description
PfamPF139121.2E-7426IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808426IPR007087Zinc finger, C2H2
SMARTSM003550.051426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-6164191No hitNo description
PfamPF139122.7E-11168192IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723169196IPR007087Zinc finger, C2H2
SMARTSM003550.18169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEKHKCRICF RRFPSGRALG GHMRSHGKLT EQASCGLRVK GRKRSRLEDP ESSSAFAAVG  60
STYAVVEDGE SETDANHRCR SKRARHAYSR PEPASSASDV TTEEDVALCL MMLSRDSWIS  120
GDVEEGNVRR ITSRSRPPRR RRSRFQCGKC KKRTDGDDDF EADADAKVFE CPFCLRVFAS  180
GQALGGHKRS HLTSSAATTM TTTSDHAKFN RALGVIDLNL PAPADDDVAL SAASDTEFIV  240
NHTAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782RCRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389680.11e-136PREDICTED: zinc finger protein ZAT1-like
TrEMBLM0S9391e-179M0S939_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18480_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-28C2H2-like zinc finger protein