PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-X1
Protein Properties Length: 860aa    MW: 95452.5 Da    PI: 8.3826
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1193.1e-06186204120
               zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                            CG H+C  lCH+GpCppCp+
  GSMUA_Achr2P18970_001 186 CG-HRCLLLCHPGPCPPCPK 204
                            **.***************96 PP
2zf-NF-X117.96.5e-06365384120
               zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                            CG+H C++ C+ G+CppCp+
  GSMUA_Achr2P18970_001 365 CGRHACKRRCCDGDCPPCPE 384
                            ******************96 PP
3zf-NF-X117.77.8e-06392411120
               zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                            C +HkC ++CH+G C pCp+
  GSMUA_Achr2P18970_001 392 CNNHKCPSPCHRGACAPCPL 411
                            558***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.68E-678146No hitNo description
PROSITE profilePS500898.80179141IPR001841Zinc finger, RING-type
PROSITE patternPS01359079140IPR019786Zinc finger, PHD-type, conserved site
PfamPF014226.3E-4186203IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0055186204IPR000967Zinc finger, NF-X1-type
CDDcd060083.05E-7248295No hitNo description
PfamPF014220.04258276IPR000967Zinc finger, NF-X1-type
SMARTSM004389.3E-4258277IPR000967Zinc finger, NF-X1-type
CDDcd060082.69E-8302351No hitNo description
SMARTSM004386.1312332IPR000967Zinc finger, NF-X1-type
PfamPF014220.62314331IPR000967Zinc finger, NF-X1-type
CDDcd060081.39E-8355403No hitNo description
PfamPF014220.0018365383IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011365384IPR000967Zinc finger, NF-X1-type
CDDcd060088.44E-11382430No hitNo description
PfamPF014220.0051392410IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0061392411IPR000967Zinc finger, NF-X1-type
SMARTSM0043817455470IPR000967Zinc finger, NF-X1-type
PfamPF0142219459469IPR000967Zinc finger, NF-X1-type
PfamPF0142223478487IPR000967Zinc finger, NF-X1-type
SMARTSM00438250478523IPR000967Zinc finger, NF-X1-type
PfamPF014220.07560570IPR000967Zinc finger, NF-X1-type
SMARTSM00438120560579IPR000967Zinc finger, NF-X1-type
SMARTSM004380.17622640IPR000967Zinc finger, NF-X1-type
PfamPF014226.4624639IPR000967Zinc finger, NF-X1-type
SMARTSM004384.9685706IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MAAAAGSRPP PTPDPASQLI FSDSDASGSD GDEAAGRGAA LEDSIFAAYL QISGRASPDL  60
SKIRSFLASA AGRGPLVSCL ICLERVRPGD PTWSCASGCH ALFHLICIQS WAQQSSHRPP  120
SATSPAAAAA ASSDWPCPKC RLPYPRTQIP RSYLCFCGKV EDPPADPWIL PHSCGEVCDR  180
PLRGQCGHRC LLLCHPGPCP PCPKLVSSRC FCGSREDVRR CAQKLEVYSC ACGKTKEERE  240
CSEREFRCDA RCTGMLGCGK HVCDRGCHSG PCGDCPLQGR RTCPCGKKEY KGVSCDMDVP  300
TCGSTCEKKL SCKIHRCHER CHRGPCVETC RMVVMKSCRC GGLKKEVPCY QDLVCERKCQ  360
QVRDCGRHAC KRRCCDGDCP PCPEICSRKL RCNNHKCPSP CHRGACAPCP LMVSISCSCG  420
ETLFEVPCGT EKNQKPPKCS RPCRISRLCR HKSECRSHKC HYGACPPCRL ECGDELSCGH  480
KCKERCHGPV PPPNPEFTLK PTKKKLNKHL ECAPGSPCPP CKEVIWVPCF GRHIGEERAM  540
LCHSKRRFSC QNLCGNLLSC GNHYCTKPCH VLKNQTSNLD QYGQGDSNTE KQDQLLLNAV  600
TKQGEPCEDC FLPCQKVREP SCPHPCPLPC HSSECPPCKV LVKRSCHCGT MVHAFECIHY  660
NSLSNEEQQR IRSCGGPCHR KLPNCPHLCS EICHPGQCPS VDHCNKKVNV RCACNNLKKE  720
WLCQEVLKAY RSSGRDPKDI PKNQFGVGIL ACSTECENKA NVVKYELQHR KANETKEHPI  780
VQVASVSKRR RRRERIQEAR QASKFQIIKS TIQRGLIISL IFMVIIASVY YGYKGLFLLS  840
DWMNEMEEQR LHRRTAVPRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1787792KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387547.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLM0S9880.0M0S988_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors