PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P19430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 541aa    MW: 59430.4 Da    PI: 6.3544
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P19430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62e-084614991854
                            HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            lFe+  ++yp+ +e+  LA k gLt+ qV++WF N R +
  GSMUA_Achr2P19430_001 461 LFENflHPYPKDNEKHSLAIKSGLTKGQVSNWFINARVR 499
                            5776679******************************88 PP
2BELL47.54.6e-16335402672
                   BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsak.pYtslAlkaiSrhFrcLkdaiaeqi 72 
                            q+ ka+Ll+ll+ Vd+ Y+++ +q+q  + sF +     +++   +++Al+++S  +++L+ +i++qi
  GSMUA_Achr2P19430_001 335 QEAKAQLLTLLQLVDHSYNHCLDQIQNAVTSFLCLSQSSTSEnTPARFALHTVSSLYKSLRKRITSQI 402
                            6789*******************************998887525699********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-12261400IPR006563POX domain
PfamPF075266.1E-25266399IPR006563POX domain
PROSITE profilePS5007111.645440503IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-25442515IPR009057Homeodomain-like
CDDcd000861.42E-10443504No hitNo description
SMARTSM003897.4E-7443507IPR001356Homeobox domain
SuperFamilySSF466894.71E-15443511IPR009057Homeodomain-like
PfamPF059201.6E-14460499IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MESDIFNGSL SVFNHNLMIL DSASSYVLSD SLVQSSLPHH NSHRQILQEV TDDIHLIRND  60
SMECSDVPSS RYINQTGNAS CSIASLFSST TCLPENIIRV DATSNLGFPP EELRVPISNN  120
LPHSASPHCD FGIQHDPGLL ASKNEATLFA ELDYSKTCSV VHPSYHVTGS SGPGWNFHNS  180
APDGELCLRI GQSSVPDMGN VADQCSERIK SADNSNLPTD FGACNHAFRK SLHDFGSGMA  240
REEATTHTEK FYSDVGSSGP VHFSLVLLRS KYLNAIQEVL GEAVSYALEN ASAAKMSFSS  300
SCSSVREIPI PVSEELPLSF GQTEPLGSMD SGYSQEAKAQ LLTLLQLVDH SYNHCLDQIQ  360
NAVTSFLCLS QSSTSENTPA RFALHTVSSL YKSLRKRITS QILTIDQHPS IAWANENEGS  420
YESSLIQKQW ALRQLKKSGQ QSWRPQRGLP EKSVSVLRAW LFENFLHPYP KDNEKHSLAI  480
KSGLTKGQVS NWFINARVRI WKPMIEEMCA ELNKKRADGG AGESRSHGNV GVQRLGSVSV  540
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15449506158Homeobox protein Meis1
4xrs_B1e-15449506158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018675143.10.0PREDICTED: homeobox protein ATH1-like
TrEMBLM0S9D40.0M0S9D4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P19430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-67homeobox gene 1