PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P20040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 249aa    MW: 27241.2 Da    PI: 9.9267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P20040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-1264110354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h e+ErrRR+riN  ++ Lr+++P a      Kl+Ka+ L +++ ++k+L
  GSMUA_Achr2P20040_001  64 KSHCEAERRRRERINGHLAVLRSMVPCA-----DKLDKAALLAEVIGHVKKL 110
                            58*************************9.....8**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.81161110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1364112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-1064110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1365113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.32E-5150228No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-4150201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGSLPDGDPG FFRGFPNGLG FSSGSDGSSS SVVLEDQERS KLVGAPWRLE GGGALDAKTA  60
MAMKSHCEAE RRRRERINGH LAVLRSMVPC ADKLDKAALL AEVIGHVKKL KRNAVEISKG  120
YTIPSDTDEV RVEVQGDAMS TGGFMVKACL CCEDRPWILA DLRQTLHSLH LQTIRAEIST  180
LGGRIKNVFV MRSAKNSRNI DRHHFVASVH QALKSILERI NSQVDFLPRA TFANKRQKIS  240
LLESSSSAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389985.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLM0S9J50.0M0S9J5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P20040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-35bHLH family protein