PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P20280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 201aa    MW: 22084.5 Da    PI: 4.631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P20280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-1650101156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            + y+GVr  ++ grWv+e+r+p++   + r++lg+fg +e+Aa a++aa+  l+ge
  GSMUA_Achr2P20280_001  50 PVYHGVR-ERNGGRWVCEVREPRK---KSRIWLGTFGEPEMAALAHDAAAITLRGE 101
                            689***9.7779******999843...6*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1250101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-2851109IPR001471AP2/ERF domain
SMARTSM003803.6E-2651114IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1951109IPR016177DNA-binding domain
PROSITE profilePS5103220.29751108IPR001471AP2/ERF domain
PRINTSPR003671.9E-95263IPR001471AP2/ERF domain
CDDcd000189.31E-1652110No hitNo description
PRINTSPR003671.9E-990110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEFEESSSSS SPPSSSSYSC CSSTSTASGT PITSGKRKAG RKKFRETRHP VYHGVRERNG  60
GRWVCEVREP RKKSRIWLGT FGEPEMAALA HDAAAITLRG ESALLNFPDL AGTLPRARSP  120
APEDVRRAAT EAENTATEDA AAPSAAVFVD EDELFNMPEL IEDMARGMLL TPPALQRRGF  180
DWDIAVEEEQ EIDLSPLWND E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1352108360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-1352108663ATERF1
3gcc_A5e-1352108663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390140.11e-113PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI45e-57DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-57DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLM0S9L91e-144M0S9L9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P20280_0011e-145(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-37C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]