PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P20490_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 243aa MW: 26695.1 Da PI: 5.4603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P20490_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.6	4.2e-16	162	213	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 l+r++r++kNRe+A rsR+RK+a++ eLe v Le+eN +L e ee k+ GSMUA_Achr2P20490_001 162 LRRQKRMIKNRESAARSRERKQAYTVELESLVTRLEEENVTLVREQEEQHKM 213 79****************************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.6E-14	156	214	No hit	No description
SMART	SM00338	1.3E-11	159	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.346	161	209	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-15	162	214	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.31E-11	162	212	No hit	No description
CDD	cd14707	1.29E-20	163	213	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MASPSSSASS DVARQSSAYA SAASCDQTEA LGSVSMDHLL RGFCAQPPFP LPLPRNAAGT 60 TADVVWEIPD GAGSGYEDAA AGADGEVTLE EFLARTGAVR EEDVGVSTGF VVDPAIGGRF 120 CQQEQQLPLE NPMLGFGSAL ESGGRRARKR VVLDDPVDKV VLRRQKRMIK NRESAARSRE 180 RKQAYTVELE SLVTRLEEEN VTLVREQEEQ HKMRFQQLMV NIIPVNESRK PLPVLRRTHS 240 MQW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390055.1	1e-179	PREDICTED: G-box-binding factor 4-like isoform X2
Swissprot	Q0JHF1	1e-36	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	M0S9P0	1e-178	M0S9P0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P20490_001	1e-178	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	6e-27	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]