PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P20760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 158aa    MW: 17743.2 Da    PI: 7.526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P20760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-18857255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f +ae+Aa a++ a+++l+g
  GSMUA_Achr2P20760_001  8 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESAEMAAVAHDVAALRLKG 57
                           69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.80E-30867No hitNo description
SuperFamilySSF541719.81E-22867IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-32867IPR001471AP2/ERF domain
PROSITE profilePS5103223.67865IPR001471AP2/ERF domain
SMARTSM003801.3E-38871IPR001471AP2/ERF domain
PfamPF008472.0E-11957IPR001471AP2/ERF domain
PRINTSPR003674.9E-10920IPR001471AP2/ERF domain
PRINTSPR003674.9E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MRADLAVQYR GVRKRKWGKW VSEIREPGKK TRIWLGSFES AEMAAVAHDV AALRLKGRDA  60
QLNFPESAEQ LPRPRSSEPK DIRSAALEAA ARLRCRTTAR AGISAGLERL GNDELGLDSP  120
RLWAELAEAL LLSPPAWTTE VTELEEWEQH GSLWDPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17865260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-17865563ATERF1
3gcc_A2e-17865563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196719e-45AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence.
GenBankAC1354609e-45AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence.
GenBankAL7316069e-45AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence.
GenBankAP0149679e-45AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126199e-45CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390148.21e-110PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I24e-37ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM0S9R71e-108M0S9R7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P20760_0011e-108(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-26ERF family protein