PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 456aa    MW: 51241 Da    PI: 8.55
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08259281527
                            --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            +C+f+   G CkyG +Ck+ H++
  GSMUA_Achr2P21000_001 259 ECKFYTMPGGCKYGKSCKYVHSQ 281
                            7********************97 PP
2zf-CCCH30.18.1e-10304325526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++++rtG Ck+  +C+++H+
  GSMUA_Achr2P21000_001 304 ECPYYMRTGNCKFSTNCRYHHP 325
                            8********************9 PP
3zf-CCCH25.62.2e-08413438227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C++++++G+C++ + CkF H++
  GSMUA_Achr2P21000_001 413 GQPECHYYMKNGFCPFKSVCKFDHPK 438
                            689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0056254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497254282IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6259281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5260281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427299327IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5299326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6300328IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7303325IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4411438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216411439IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5413438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5415440IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MIDSFCLFLQ ACDHNNYNAE KKQKGTVLKK LEQTEKKVGE KEKKVAQKNF KPEDAEKKQK  60
GTVLKKVEQT EKKAVEKEEQ TPSKKMDQEK VTLKKQWKVV QKAAREEHEE SSLIMEVQTS  120
CRVDEKEKEI AHSFMQLKCE KTEEKQKAFL LRTVEQTEIK AAEDKQSFPE RIEHEDKKVD  180
ILSLPEEKQT LSGRSEQQDY KAAREKGKET TSEKGEQTEF KAGTEEGKET TLGKGGLIEH  240
KVAMEKSKET TLEKGGQIEC KFYTMPGGCK YGKSCKYVHS QKKMEGNPSK LNFLGLPIRL  300
GAKECPYYMR TGNCKFSTNC RYHHPDPSVA MVGHDPHSGC QSSGSMQQSA FGASTMPVTP  360
SRSQGTLNGP TSFVVASPAC SPASNLHSQG FHSNSGCNGY QQVHIDEYPE RSGQPECHYY  420
MKNGFCPFKS VCKFDHPKSH LPTKSNGVSI PSCPPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390115.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
TrEMBLM0S9U10.0M0S9U1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-35C3H family protein