PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P21010_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 187aa MW: 20185.8 Da PI: 8.6324

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P21010_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	3.9e-11	95	118	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+++tGtCk+G +C+F+H+p GSMUA_Achr2P21010_001 95 PNCAFYMKTGTCKFGFNCRFNHPP 118 79********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.493	91	119	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	91	118	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	95	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.9E-9	95	118	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.1E-4	97	117	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGVVEAKLSV KDDAKSSSSP PPPNFSMDGA HRGLASMMPE EKPLDVVGDP EIPEPADDVG 60 FDQDPQSPKK GGEEGVAAAA EKGVWPGFSQ RPDAPNCAFY MKTGTCKFGF NCRFNHPPKR 120 RHRAKPEKQS EYVQTIKAAH KGSGSEKMGQ TTCKEFGKVG EKEKKVAQKS FRPEASFSTT 180 IISSIGL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390122.1	1e-127	PREDICTED: putative zinc finger CCCH domain-containing protein 9 isoform X13
TrEMBL	M0S9U2	1e-134	M0S9U2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P21010_001	1e-135	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17256	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-10	C3H family protein