PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 211aa    MW: 23683.9 Da    PI: 9.2579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1355.2e-42151411128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatg 87 
                            lppGfrFhPtdeelv +yLk+kv +++l+  ++i+evd+ k++PwdLp++   + +e+ yfF  r+ ++++ +r+n+a+ sg+Wkatg
  GSMUA_Achr2P21110_001  15 LPPGFRFHPTDEELVLQYLKRKVYSSPLPS-SIIPEVDLSKYNPWDLPACGGCGCEEVkYFFGLREARNPNRSRRNQAAGSGFWKATG 101
                            79**************************99.89***************75555555555***************************** PP

                    NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            k+k+v+ +  +++vg+kk+ vf++g+ p+  kt+W+mheyrl
  GSMUA_Achr2P21110_001 102 KEKPVTLSwCHRVVGMKKVSVFHRGKPPT--KTEWIMHEYRL 141
                            ******9999999**********999998..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4911171IPR003441NAC domain
PROSITE profilePS5100548.7115171IPR003441NAC domain
PfamPF023651.6E-2416141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEKPRFTGN GVLRLPPGFR FHPTDEELVL QYLKRKVYSS PLPSSIIPEV DLSKYNPWDL  60
PACGGCGCEE VKYFFGLREA RNPNRSRRNQ AAGSGFWKAT GKEKPVTLSW CHRVVGMKKV  120
SVFHRGKPPT KTEWIMHEYR LAGPHATTTS DATHGTMAAR WDWVVCRVFK KKRAKIEIGE  180
DHRQESSCVT ELSDGSGDGE EASSGSMSLT P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-441317213169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390395.11e-157PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY938e-60NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM0S9V21e-156M0S9V2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21110_0011e-157(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-62NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]