PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P21280_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 503aa MW: 53800.5 Da PI: 7.1832

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P21280_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	317	364	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq GSMUA_Achr2P21280_001 317 AHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 364 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.55E-11	311	368	No hit	No description
SuperFamily	SSF47459	8.51E-17	311	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-17	313	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.205	313	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-6	317	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	319	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSFSARLYHP EMEKEAFWGL NWQSTDAKVP PELNSGTAAA ALLPQRLLNL NWNQPMSCDA 60 GFESALSSAV VGQTGSICNS GEISPSSRRR GASNSCYSSP LNSPPKLNGR GALPMPINPM 120 PGAHSVPFAA EPWFADGAAM LSNYGGGSSA GFPGQFGLPV IPANLSRVSS SKSLKTGTGS 180 GMGAPEKGSD AGMLGPARME MEMMSKLGGS STPADSEPGN GQEESSVSSL RGVTDSNARK 240 RKAAAKGKGK EASLSYAATD PFTMTEEENS DAKRSKPAEA NGKMKTEQNG DPGRKQPPEP 300 PKDYIHVRAR RGQATDAHSL AERVRREKIS KRMKFLQDLV PGCNKVTGKA VMLDEIINYV 360 QSLQRQVEFL SMKLATLNPQ LDDMESILSK DMFQARGLMP QPVYPAEMTS AAVSNVHQPQ 420 ATPGQSIVTS LLEAQFSLNP LESSLHQSQS LQLVPLDGFT VASSQLGEFW EDDLQSVAQV 480 GYGRDQKPAF SSQSYPGHMK IEL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSFSARLYHP EMEKEAFWGL NWQSTDAKVP PELNSGTAAA ALLPQRLLNL NWNQPMSCDA  60
GFESALSSAV VGQTGSICNS GEISPSSRRR GASNSCYSSP LNSPPKLNGR GALPMPINPM  120
PGAHSVPFAA EPWFADGAAM LSNYGGGSSA GFPGQFGLPV IPANLSRVSS SKSLKTGTGS  180
GMGAPEKGSD AGMLGPARME MEMMSKLGGS STPADSEPGN GQEESSVSSL RGVTDSNARK  240
RKAAAKGKGK EASLSYAATD PFTMTEEENS DAKRSKPAEA NGKMKTEQNG DPGRKQPPEP  300
PKDYIHVRAR RGQATDAHSL AERVRREKIS KRMKFLQDLV PGCNKVTGKA VMLDEIINYV  360
QSLQRQVEFL SMKLATLNPQ LDDMESILSK DMFQARGLMP QPVYPAEMTS AAVSNVHQPQ  420
ATPGQSIVTS LLEAQFSLNP LESSLHQSQS LQLVPLDGFT VASSQLGEFW EDDLQSVAQV  480
GYGRDQKPAF SSQSYPGHMK IEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390383.1	0.0	PREDICTED: transcription factor bHLH77
TrEMBL	M0S9W9	0.0	M0S9W9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P21280_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-61	bHLH family protein