PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 291aa    MW: 31399.1 Da    PI: 6.5162
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19130179255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+ ae+Aa a+++a+++++g
  GSMUA_Achr2P21430_001 130 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDRAEDAAMAYDEAALRFKG 179
                            7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32129188IPR001471AP2/ERF domain
PfamPF008471.7E-12130179IPR001471AP2/ERF domain
SMARTSM003801.1E-36130193IPR001471AP2/ERF domain
CDDcd000181.36E-32130188No hitNo description
PROSITE profilePS5103224.236130187IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22130188IPR016177DNA-binding domain
PRINTSPR003677.2E-11131142IPR001471AP2/ERF domain
PRINTSPR003677.2E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPSQPIKATH PTLLTLPPLI TISLTPSTLF CPPFPSFFYL HGKRPLRSDE APEEKEEEGG  60
LSSHCIPARV DQEASAMVSA LTHVISSVSP VVGAGGDELV AEPDASCGSG PGSMEIGTQA  120
SEEQGTCRRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DRAEDAAMAY DEAALRFKGT  180
KAKLNFPERV QGRTDLGFLV TRAAPERQPQ PPATSYPDLR QYAQLLQSGD ADVHNAALGL  240
YAGSTITSTS LSGSSQETQD LSSRSQFTSS SASSSWPQSG QKEKDQRPPT M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-25129190163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390372.11e-136PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLM0S9Y40.0M0S9Y4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-33ERF family protein