PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 220aa    MW: 24155.9 Da    PI: 10.6954
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind25.43.8e-08150151
              GAGA_bind  1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekka 51
                           mdddg    rn+gyyep    k nlgl+lmss+ er+ak+  +n  +++++ 
  GSMUA_Achr2P21670_001  1 MDDDGGLGiRNWGYYEPP--SKGNLGLRLMSSVVERNAKPLLSNGGFIHRHC 50
                           999999999*******99..799****************9877777776665 PP
2GAGA_bind269.61.7e-8261220140301
              GAGA_bind 140 aaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
                            + ++ k+++  kkr r+  +k++k k++kk + ++ ++v + s+ +r ka +ks+++ +ng+++D+s++P+PvCsCtG+++ CY+WG 
  GSMUA_Achr2P21670_001  61 EDTTGKNEPPLKKRPRGCLQKSSKPKRPKKVT-APSDEVPNGSV-SRGKAARKSTGMIINGIDFDISRIPTPVCSCTGKPQPCYRWGV 146
                            34455666677888899999999999**9955.55566666654.79***************************************** PP

              GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DL+++WAkHGtnkfvtir
  GSMUA_Achr2P21670_001 147 GGWQSACCTTNMSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRTFWAKHGTNKFVTIR 220
                            *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.1E-8144IPR010409GAGA-binding transcriptional activator
SMARTSM012261.4E-1191220IPR010409GAGA-binding transcriptional activator
PfamPF062177.9E-8359220IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDDDGGLGIR NWGYYEPPSK GNLGLRLMSS VVERNAKPLL SNGGFIHRHC SFPEPSVLMA  60
EDTTGKNEPP LKKRPRGCLQ KSSKPKRPKK VTAPSDEVPN GSVSRGKAAR KSTGMIINGI  120
DFDISRIPTP VCSCTGKPQP CYRWGVGGWQ SACCTTNMSM YPLPMSTKRR GARIAGRKMS  180
QGAFKKVLEK LAGEGYNLSN PIDLRTFWAK HGTNKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490PKRPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390341.11e-137PREDICTED: protein Barley B recombinant-like
RefseqXP_009390343.11e-137PREDICTED: protein Barley B recombinant-like
SwissprotP0DH887e-75BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH897e-75BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLM0SA081e-162M0SA08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21670_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-74basic pentacysteine1
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]