PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P21730_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YA

Protein Properties

Length: 291aa MW: 31837.5 Da PI: 9.3664

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P21730_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.7	3.3e-32	140	196	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Ra+le+++k+ +k+rkpylheSRh hA++R RgsgGrF GSMUA_Achr2P21730_001 140 EEPVYVNPKQYNAILRRRQLRARLEAQNKV-IKTRKPYLHESRHLHAMKRVRGSGGRF 196 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.7E-37	138	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.728	139	199	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.1E-27	141	196	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-22	142	164	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-22	173	196	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MHMDFLAQHG NQMKHLGDQM PDQNSSSTQS SGQAHQEVSG TSECNNHEQY ISAHSATDNT 60 HEKQVEGHMK AVLTLGTPEA SSAPPRFDYN QPFACISYPY ADAYYGGVLA TYGPHAIIQP 120 QMAGMASSAR VLLPTEPAAE EPVYVNPKQY NAILRRRQLR ARLEAQNKVI KTRKPYLHES 180 RHLHAMKRVR GSGGRFVNTK QLQQQNSQPC SSKACRNVSC SEPCSCSGLI GSSATSTSSD 240 MTSLSTSRRM LVQQDQSCYS LPGFRSSAAA TSQGRGRKMG NGSEQRTPAV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	140	201	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678185.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_018678186.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_018678187.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7
TrEMBL	M0SA14	0.0	M0SA14_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P21730_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-33	nuclear factor Y, subunit A3