PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 253aa    MW: 27716 Da    PI: 7.34
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd  lv +++q+G+g+W++I+   g++R+ k+c++rw +yl
  GSMUA_Achr2P22010_001 14 KGPWTPEEDITLVSYIQQHGPGNWRAIPPNTGLRRCSKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding52.31.3e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T +E++l+v++  +lG++ W++Ia++++  Rt++++k++w++yl
  GSMUA_Achr2P22010_001  67 RGNFTDQEEKLIVHLQSLLGNR-WAAIASYLP-ERTDNDIKNYWNTYL 112
                            89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.303965IPR017930Myb domain
SuperFamilySSF466891.83E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
CDDcd001677.97E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129420.46966116IPR017930Myb domain
SMARTSM007175.0E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1567112IPR001005SANT/Myb domain
CDDcd001677.33E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRPPCCDKD GVKKGPWTPE EDITLVSYIQ QHGPGNWRAI PPNTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIVH LQSLLGNRWA AIASYLPERT DNDIKNYWNT YLKKKLRKLE  120
IGGTDSPIGS ESKASPFDRS LSSRPSSTYA SSTENISRLL AGWMSGTSSK PGVAQASSAS  180
VRADTASSQG SASASSSNCI MSPEPLESLL GLHDSTPEGS EAQAPLSLLE SWLLDEDAGQ  240
KQENFLDMAT DYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-271411627128MYB TRANSFORMING PROTEIN
1mse_C4e-27141164105C-Myb DNA-Binding Domain
1msf_C4e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390302.11e-172PREDICTED: myb-related protein 306-like
SwissprotB3VTV74e-88MYB60_VITVI; Transcription factor MYB60
TrEMBLM0SA420.0M0SA42_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-79myb domain protein 96
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]