PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 242aa    MW: 27402.3 Da    PI: 8.741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-1452103155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r+ah ++Er+RR+++N+ ++ Lr+l+P+    + ++ + a+i+  A++Y+k+L+
  GSMUA_Achr2P22310_001  52 QRMAHIAVERNRRRQMNEYLAVLRSLMPSF---YVQRGDQASIVAGAINYVKELE 103
                            79***************************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.53E-1250107No hitNo description
PROSITE profilePS5088815.82851102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1751117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1552119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-1252103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1157108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEDDKGAVQE CDPSCSSAQN LHGGVGEAME VAGRRKRRCG RSIKNREEVE SQRMAHIAVE  60
RNRRRQMNEY LAVLRSLMPS FYVQRGDQAS IVAGAINYVK ELEQLLRSME VEKRLKRRTD  120
AAAVASAFAG FFSFPHHSGA FYRNTGEIEN QTATANIEVT MLESHANLKL LSRRRPRQLL  180
RLVAGLQSLR LVPLHLNVTS VDRIVMYSFS LKVEDDCRCT SADEIAEAIH RMLIRIEEEA  240
NL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15263RMAHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390274.11e-149PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLM0SA721e-177M0SA72_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22310_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]