PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P22560_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

RAV

Protein Properties

Length: 310aa MW: 34874.7 Da PI: 10.3762

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P22560_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	56	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r r++lg+fg + eAa+ ++ a+++++g GSMUA_Achr2P22560_001 56 SQYKGVVPQP-NGRWGAQIYE------RhNRVWLGTFGDEAEAARTYDVAAQRFRG 104 78**9888.8***99......44******99***********98 PP
2	B3	91.9	4.7e-29	131	229	2	94
EEE-..-HHHHTT-EE--HHH.HTT......---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh......ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 +kv tpsdv+k++rlv+pk++ae+h + +++ l +ed sgr+W+++++y+++s++yvltkGW+++vk++gLk+gD v GSMUA_Achr2P22560_001 131 DKVVTPSDVGKLNRLVIPKHHAEKHfpsksgS---SlacKGVLLNFEDASGRVWRFRYSYWNSSQSYVLTKGWSRYVKEKGLKAGDLV 215 6999*******************9877652...1344889****************************************** PP EEEE-SSSEE..EE CS B3 81 vFkldgrsefelvv 94 F ++ e++l++ GSMUA_Achr2P22560_001 216 SFWRSTGPEKQLYI 229 976555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.24E-13	56	110	IPR016177	DNA-binding domain
CDD	cd00018	1.29E-19	56	107	No hit	No description
SMART	SM00380	4.3E-17	57	116	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.083	57	112	IPR001471	AP2/ERF domain
Pfam	PF00847	7.2E-8	57	104	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-16	57	109	IPR001471	AP2/ERF domain
Gene3D	G3DSA:2.40.330.10	5.1E-37	124	234	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.4E-30	129	233	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.155	130	233	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-21	130	233	IPR003340	B3 DNA binding domain
CDD	cd10017	1.89E-27	132	220	No hit	No description
Pfam	PF02362	7.0E-26	132	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDSSCVEEAS SDSEKRLQAP LHVMEALQRM GSGASVVLDP ILRGGTEAES RKLTSSQYKG 60 VVPQPNGRWG AQIYERHNRV WLGTFGDEAE AARTYDVAAQ RFRGRDAIVD MLRKHTKTPG 120 YSRSAREFLL DKVVTPSDVG KLNRLVIPKH HAEKHFPSKS GSSLACKGVL LNFEDASGRV 180 WRFRYSYWNS SQSYVLTKGW SRYVKEKGLK AGDLVSFWRS TGPEKQLYIN CRTGAVANNP 240 YLPSVIRLFG VNISELPASH GEGKRGKEAT EFFPPPKPLE KPFRYARALL TKSLARKSLF 300 VSIQNWYRTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	4e-51	127	233	11	116	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269\|PubMed:18718758, ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390239.1	0.0	PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
Swissprot	P82280	1e-101	RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBL	M0SA97	0.0	M0SA97_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P22560_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-103	related to ABI3/VP1 2

Publications ? help Back to Top
Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Sun YW, et al. Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus. Sci Rep, 2015. 5: p. 16476 [PMID:26602265] Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] Matías-Hernández L, et al. TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039] Li P, et al. The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses. Physiol Plant, 2017. 159(4): p. 416-432 [PMID:27747895]