PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 91aa    MW: 9868.61 Da    PI: 8.9259
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260865.2e-27291185
                 DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
                           +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yGa+g++ ++++
  GSMUA_Achr2P22720_001  2 SCNGCRVLRKGCSDGCTIRPCLqwiksPEAQANATLFLAKFYGRAGLLNLMDAGPQNLRPAIFRSLLYEACGRIINPIYGAAGLLCSGTW 91
                           6***********************************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.671191IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-22289IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCTIR PCLQWIKSPE AQANATLFLA KFYGRAGLLN LMDAGPQNLR  60
PAIFRSLLYE ACGRIINPIY GAAGLLCSGT W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021998462.17e-56LOB domain-containing protein 41-like
RefseqXP_023769321.14e-56LOB domain-containing protein 41-like
SwissprotQ9M8863e-52LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0SAB37e-60M0SAB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22720_0011e-60(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-54LOB domain-containing protein 41