PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P23100_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 216aa MW: 23289.4 Da PI: 8.0621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P23100_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	102	139	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+ YIk L GSMUA_Achr2P23100_001 102 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFL 139 7788999*******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.405	90	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-4	100	144	No hit	No description
SuperFamily	SSF47459	1.44E-10	100	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-8	104	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDDVHALDLS ASAGLGGGVS FCQPSLAGMA LLGEDASSGL DHLQESIQGP FYLHHKMPSL 60 VSGVTEAMRC NSGWEHKSCQ AAPGNPRFQQ QQRSSCSPFK VRKEKLGDRI AALQQLVAPF 120 GKTDTASVLM EAIGYIKFLL DQVEKLSVPY MRSSGSKKRS RTTQEVLRGS CHASNEEAKR 180 DLRSRGLCLV PLACTSYMTT TTEQGVWSAA TYGGSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390169.1	1e-150	PREDICTED: transcription factor bHLH110-like
Swissprot	Q9SFZ3	2e-42	BH110_ARATH; Transcription factor bHLH110
TrEMBL	M0SAF1	1e-159	M0SAF1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P23100_001	1e-160	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-42	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]