PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P23130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 175aa MW: 19129.9 Da PI: 7.311

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P23130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.4	8.2e-27	11	71	1	61
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++ l GSMUA_Achr2P23130_001 11 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVQRL 71 7********************************************************9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.22	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-26	11	74	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MASSSSSSNS PCAACKFLRR KCMPGCIFAP YFPPEEPQKF ANVHKVFGAS NVTKLLNELL 60 PHQREDAVQR LQKELDAANA ELLRYACNEI PMGLTVPPTM ASPMMDYPRI EYCRRTGING 120 GSPLCPAPAL ALPSLPPWSG NDFPGDHENS NPVAMQITAC ELQNDHKATN LSSLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	2	96	2	128	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	2	96	2	128	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677897.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018677898.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018677899.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018677900.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q9FML4	1e-44	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	M0SAF4	1e-127	M0SAF4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P23130_001	1e-127	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-42	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]