PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 181aa    MW: 20683.6 Da    PI: 8.2277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17495290
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                           +k+lt+sdv++ gr+vlpk+ ae++   ++++e++ l + d +   +W++k+++  ++ks++y+l+ ++ +Fv+a+ L++gDf+ +++  
  GSMUA_Achr3P00120_001  4 CKELTNSDVSNIGRIVLPKREAEAYlpPLSEREGILLDMDDmTLAVTWKFKFRFwpNNKSRMYILE-NTAGFVRAHCLQAGDFLFIYR-- 90
                           799************************889999999**9996677*******99777888888888.*****************9994.. PP

                           S.SEE CS
                     B3 87 r.sef 90
                           + +++
  GSMUA_Achr3P00120_001 91 NpTSG 95
                           43444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-262102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-20298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-242100No hitNo description
SMARTSM010191.0E-123102IPR003340B3 DNA binding domain
PfamPF023627.8E-14495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MILCKELTNS DVSNIGRIVL PKREAEAYLP PLSEREGILL DMDDMTLAVT WKFKFRFWPN  60
NKSRMYILEN TAGFVRAHCL QAGDFLFIYR NPTSGNHIVR GNKGMPQRSP LDSLQYSSRN  120
QFIVNEDCCS STLHVKKARS DRRHSPINPN KIIGHGSSSL TMTELNDLEG DITCHPHYFP  180
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-3411153116B3 domain-containing transcription factor FUS3
6j9b_D4e-3411153116B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664310.18e-54B3 domain-containing protein Os04g0676600-like
SwissprotQ7XKC43e-44Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLM0SAI01e-134M0SAI0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00120_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-34B3 family protein