PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 114aa    MW: 13337 Da    PI: 10.3014
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86.1e-094385347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +WT +E+e + +a +q G++ +++I  +++  +   q++++++ +
  GSMUA_Achr3P00180_001 43 AWTRQEEENFFNALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 85
                           6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.76E-122790IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-63788IPR009057Homeodomain-like
PROSITE profilePS5129312.6943990IPR017884SANT domain
SMARTSM007175.1E-54088IPR001005SANT/Myb domain
CDDcd001677.07E-64386No hitNo description
PfamPF002497.7E-74385IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MENQTSPTEN LLINNANNTS PSSSSMCTDT QNPVKKPTRQ WAAWTRQEEE NFFNALRQVG  60
KNFEKITCRV QSKNKDQVRH YYYRLVRRMN KLLGPGFCFD AKNSKDTNAA MLRW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391059.12e-76PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_009391060.12e-76PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_009391061.12e-76PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_009391062.11e-76PREDICTED: TSL-kinase interacting protein 1 isoform X2
RefseqXP_018679681.12e-76PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_018679682.12e-76PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_018679683.11e-76PREDICTED: TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT81e-47TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A444D6D22e-80A0A444D6D2_ENSVE; Uncharacterized protein
TrEMBLM0SAI62e-80M0SAI6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00180_0013e-81(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.34e-48TSL-kinase interacting protein 1