PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 255aa    MW: 28282.8 Da    PI: 9.8469
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.5e-42135212178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +Cq+egC++dls ak+yhrrh+vCe+hska+vv+v g +qrfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+q+
  GSMUA_Achr3P00810_001 135 RCQAEGCRTDLSGAKHYHRRHRVCEFHSKATVVVVGGSQQRFCQQCSRFHGLAEFDEAKRSCRKRLADHNRRRRKPQP 212
                            6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-35130197IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633133210IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-40134214IPR004333Transcription factor, SBP-box
PfamPF031109.5E-32136209IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMNRSSSAEA YFAPSMMSFV GLEGSSLKHQ TWDWETSSID ANTTTTPVTT SNLQSHPFFP  60
NVPLLDCTPP PLLPMTNSFP FYSAPPLPEY PVGLIKREDG VGGRIGLNLG RRTYFSSGES  120
LTTRGVYSLS HQPPRCQAEG CRTDLSGAKH YHRRHRVCEF HSKATVVVVG GSQQRFCQQC  180
SRFHGLAEFD EAKRSCRKRL ADHNRRRRKP QPPATMAEPS APNNANASSR GQKTTRDSSN  240
LGAPIPLFYQ QPLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291362091184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192209KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678966.10.0PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
TrEMBLM0SAP90.0M0SAP9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-47squamosa promoter binding protein-like 8