PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P01650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 330aa    MW: 36430.4 Da    PI: 5.0756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P01650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20162210355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  GSMUA_Achr3P01650_001 162 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFELRG 210
                            8******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-22161219IPR016177DNA-binding domain
SMARTSM003804.6E-38161224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-32161219IPR001471AP2/ERF domain
PROSITE profilePS5103222.985161218IPR001471AP2/ERF domain
PfamPF008472.8E-14162210IPR001471AP2/ERF domain
PRINTSPR003679.7E-11162173IPR001471AP2/ERF domain
CDDcd000181.29E-32162220No hitNo description
PRINTSPR003679.7E-11184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAAAMDVYSS MPGSSSSDPL MEALDPFIKG APTSCYPSSS SFASSESFCY PSSSPVSPFS  60
PYLHQDPSFD PSLLSESSYE MPPQHLLNQK DDFLGCLSSV GFSYLFPAHI QQIRAQFQYQ  120
QQLMAAASER RNLGNADPLA ARRRPMKHAG SPPSPPKPTK LFRGVRQRHW GKWVAEIRLP  180
RNRTRLWLGT FDTAEEAALA YDRAAFELRG DAARLNFPEL RRNGSHMGPP LHSSVDAKLQ  240
TIYDTMANSQ KPKSALPGSA TTEEPGTSSE DNKSESSSSL EEDEPCSGSS AVSAMQHLDF  300
SEAPWDESES FVLRKYPSWE IDWDSILSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20160218160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20160223467ATERF1
3gcc_A5e-20160223467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390914.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLM0SAY30.0M0SAY3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P01650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-49related to AP2 4