PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P02280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30061.5 Da    PI: 9.4066
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P02280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF977.9e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCdaev++iifs +gklyey+s
  GSMUA_Achr3P02280_001  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVSLIIFSAEGKLYEYAS 59
                           79***********************************************86 PP
2K-box100.32.7e-338917415100
                  K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                             ++++e+akLk++ e L r+qRhl+Ge+L+sL++keLqqLe+qLe+s+k+iRs+K++++l+ + elq+kek+l+e+nk L+++l+e
  GSMUA_Achr3P02280_001  89 GNWYREYAKLKAKFEVLHRSQRHLMGEQLDSLTVKELQQLEHQLETSMKQIRSRKTQIMLDFVAELQRKEKSLREQNKILEEELME 174
                            58*******************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.66161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-33285IPR002100Transcription factor, MADS-box
CDDcd002659.91E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.87288178IPR002487Transcription factor, K-box
PfamPF014862.2E-3089172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVSLIIFSA EGKLYEYASN  60
SCMEKILERY ERCCYAEKAI ACSDPGPQGN WYREYAKLKA KFEVLHRSQR HLMGEQLDSL  120
TVKELQQLEH QLETSMKQIR SRKTQIMLDF VAELQRKEKS LREQNKILEE ELMEKQKLMA  180
PSHQAQRQQQ NQLPSSSSSP SSFPIAGLIA ESNPILSIGT FRGRGSVDSE AAAQTQVRNT  240
SSLLPPMDAW PSEWLTSMCN LKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21170169MEF2C
5f28_B3e-21170169MEF2C
5f28_C3e-21170169MEF2C
5f28_D3e-21170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693277e-59KF469327.1 Brachypodium distachyon MADS-box transcription factor 33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380134.21e-119PREDICTED: truncated transcription factor CAULIFLOWER A-like, partial
SwissprotQ6E6S74e-90AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLM0SB460.0M0SB46_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P02280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-76AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]