PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P03500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 217aa    MW: 24712 Da    PI: 8.2339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P03500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.32.7e-31101421128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkya...tgkrknratk.s 80 
                            +ppGfrFh tdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwd++ +   ++  +  ++   s + + ++   + + ++++ + s
  GSMUA_Achr3P03500_001  10 VPPGFRFHHTDEELLYYYLRKKVAYEAIDL-DVIREVDVNKLEPWDIEgSrsaELGVGL-KTCCSSLATRIAStqpELEPTEQQLQvS 95 
                            69****************************.9***************943333222222.3333333333333111222333333314 PP

                    NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            g   + g+dk+++ ++++ +g++ktL fy+grap+g+ktdW+mheyrl
  GSMUA_Achr3P03500_001  96 G-RAQRGRDKAIHLSNSRRIGMRKTLLFYTGRAPHGQKTDWIMHEYRL 142
                            5.4789****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-335176IPR003441NAC domain
PROSITE profilePS5100533.74810176IPR003441NAC domain
PfamPF023655.0E-1611142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTPSNGQLAV PPGFRFHHTD EELLYYYLRK KVAYEAIDLD VIREVDVNKL EPWDIEGSRS  60
AELGVGLKTC CSSLATRIAS TQPELEPTEQ QLQVSGRAQR GRDKAIHLSN SRRIGMRKTL  120
LFYTGRAPHG QKTDWIMHEY RLDESLDIQK SHFVLRKKSH SGSLEDGWAV CRVFKKKNHQ  180
GVIPPEAILE EDQFNPSKAS GCSPVDHKHN FQKSECI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391138.21e-110PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 76-like
SwissprotQ5Z6B65e-60NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLM0SBG81e-162M0SBG8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P03500_0011e-163(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-58NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]