PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P03510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 241aa    MW: 26515.4 Da    PI: 10.4278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P03510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-1363109354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h+e+ErrRR+riN  ++ Lr+++P +      K++Ka+ L +++ ++k+L
  GSMUA_Achr3P03510_001  63 KSHSEAERRRRERINGHLAVLRSMVPCD-----DKMDKAALLAQVISHVKKL 109
                            68*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1163109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-1463111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1364117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.5E-6148195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGSVPVGDSG FCRRFPNGLG FDFGSDGSSS SMVLDQERRA PSRLGGKRVG AGILDAKTAM  60
AMKSHSEAER RRRERINGHL AVLRSMVPCD DKMDKAALLA QVISHVKKLK RNAAEINKSY  120
TVPSDTDEVR VEVEGDMTIA GRLMVRASLC CDDRPEILAD LRQALSGLHL KTVRAEISTL  180
GGRMKNVLTM TSEGTFSNVD KHLFVASVHQ ALNSILDRVK SREDFLPRAS FSNKRQRISP  240
F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390676.11e-176PREDICTED: transcription factor bHLH30-like
TrEMBLM0SBG91e-175M0SBG9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P03510_0011e-176(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-43bHLH family protein