PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P03550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 232aa MW: 25986.3 Da PI: 9.4738

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P03550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3e-11	107	157	9	59
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 r NR +A+rsR RK+++i eLe+ v +Le+e +aL ++ l ++ + l GSMUA_Achr3P03550_001 107 RILANRQSAQRSRVRKLQYISELERSVTSLETEVSALSPRVAFLDQQRSLL 157 6678*********************************99988887777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-13	98	163	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	101	157	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.19E-21	103	154	No hit	No description
SuperFamily	SSF57959	1.48E-10	104	157	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-13	105	157	No hit	No description
Pfam	PF00170	4.2E-9	105	155	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	107	121	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAQLPPKIPN AATDWHGSVH HKNFCMGTAD SWVDEFLDFS AAKRAAHRRS ASDSIAFLEA 60 PVESVGVGGG HEFGRLDDDQ LMSMFSDEAP HSPSDAQNFD PKRVKSRILA NRQSAQRSRV 120 RKLQYISELE RSVTSLETEV SALSPRVAFL DQQRSLLTMG NSHLKQRIAA LAQDKIFKDA 180 HQEALKKEIE RLRQVYYQQS LKKMADATAT DTTLRASNGV TVDILRVIER PK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390671.1	1e-147	PREDICTED: basic leucine zipper 6-like
Swissprot	Q5JMK6	2e-80	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	M0SBH3	1e-171	M0SBH3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P03550_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	8e-57	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]