PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P04360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 250aa    MW: 28415.8 Da    PI: 9.6826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P04360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20141190255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta+eAa a+++a+ +l+g
  GSMUA_Achr3P04360_001 141 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAKEAALAYDQAAYRLRG 190
                            59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-31140200No hitNo description
Gene3DG3DSA:3.30.730.105.7E-32141199IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22141199IPR016177DNA-binding domain
SMARTSM003807.5E-36141204IPR001471AP2/ERF domain
PROSITE profilePS5103222.655141198IPR001471AP2/ERF domain
PRINTSPR003677.4E-11142153IPR001471AP2/ERF domain
PfamPF008474.2E-14142190IPR001471AP2/ERF domain
PRINTSPR003677.4E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAAAIDLYSS RSVLPADPFN EELMKALEPF ITSVSTSSSP PPPSSNSIIT HYHSSFAPSY  60
AYQNPSFDHY SHQNHTFASH LHQDPIQIQA QTQLQQQHQR LLAARQSPPN RHHRQAAGFF  120
APRPHPMKHA GSPPLPKPTK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAKEAALA  180
YDQAAYRLRG GLARLNFPDL RAADSLGSPP VSEMQRLDFT EVPWDETESF VLRKYPSWEI  240
DWDSILSSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20140198463ATERF1
3gcc_A5e-20140198463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390585.11e-112PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLM0SBQ40.0M0SBQ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P04360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-45ERF family protein