PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P04450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 345aa    MW: 38575.7 Da    PI: 5.9943
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P04450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.7e-28958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  GSMUA_Achr3P04450_001  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58
                           79********************************************9997 PP
2K-box24.89.2e-10109178978
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                            + +++ae+lqqe+ + +++++ +++ +R +  + L+  s+ +L++ e+ + ++l+++ ++K+ ll ++++
  GSMUA_Achr3P04450_001 109 VVNSNAEELQQEICRYQQQLQLMEQRLRFFEPDPLSFTSITDLESCEKFVMEALQRVTARKEYLLSNHLS 178
                            77899************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
CDDcd002652.16E-37278No hitNo description
SuperFamilySSF554555.89E-30280IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVLARY VNLPENDRGG VVQNREFVIN TLKKLKCEND TAALVNPGVV NSNAEELQQE  120
ICRYQQQLQL MEQRLRFFEP DPLSFTSITD LESCEKFVME ALQRVTARKE YLLSNHLSPY  180
DPSTTSMQCH ASILVQMYLQ PQQERLPNPY GNEMVQWVPE GASNPSHQIF VGSDPLMDLR  240
EHAIYDSIAP QSMGLQLDPG AAGCHVGNQH DTSWHQGYTS TEFLSALIPS PPYPLIQHPM  300
GPADLPTMVP HEQVQGMAGC PSVPVDDGGA ATNTYDGNAA PANVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-18194190MEF2 CHIMERA
6bz1_B2e-18194190MEF2 CHIMERA
6bz1_C2e-18194190MEF2 CHIMERA
6bz1_D2e-18194190MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417786.10.0PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLM0SBR30.0M0SBR3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P04450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-76AGAMOUS-like 104