PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P05360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 464aa    MW: 50694.8 Da    PI: 9.1925
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P05360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.98.9e-41176251277
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            CqvegC+ dl+ ak+yhr+h++Ce hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+ 
  GSMUA_Achr3P05360_001 176 CQVEGCNIDLTIAKDYHRKHRICESHSKSPKVIVAGQERRFCQQCSRFHHLSEFDQTKRSCRRRLSDHNARRRKPP 251
                            **************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-34168237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.317173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38174255IPR004333Transcription factor, SBP-box
PfamPF031102.1E-31176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDWVAKTPFQ WDWETLELFS EKEKEICKSA QEPLLKSQGS MGICNGSVCS SHGEASSALE  60
LGNSSSKIFV SSSVDSSPKT EQRNLEFNFN SAEATTHSSN KIIFARVGGS GTSPVPLAAG  120
RPKEPLTRLK LGHTYFEEGG AKNNVKSSSS LPPLASSAVV AKKPRVSQQS SQSPYCQVEG  180
CNIDLTIAKD YHRKHRICES HSKSPKVIVA GQERRFCQQC SRFHHLSEFD QTKRSCRRRL  240
SDHNARRRKP PPATISFNSS RISSSFYDDR HQMNLDFGPT PLGHMTTTVS FPWDGPSNFK  300
LVQPNSWTKS NKVAGINGQL QFSKSCQTHN ISTLRHVNMD GLLPTKGTTV DVLNEALESS  360
AFASNLDGAP GLGCALSLLS NDPCGSANPG PTSHIKLAKA KNAVAIRPAA SPIDLATRFL  420
QDDQSPSQSM MLPFNPQNGN GGQFQEFQLH KAPYQASFDS TRIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-26170249584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390476.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018679036.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLM0SC040.0M0SC04_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P05360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-49squamosa promoter binding protein-like 2