PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P05620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 250aa    MW: 27075.5 Da    PI: 7.2523
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P05620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.4e-17166202135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg  +  Tp++Rrgpdg++tLCnaCGl+++ kg+
  GSMUA_Achr3P05620_001 166 CHHCGINSksTPMMRRGPDGPRTLCNACGLMWANKGT 202
                            ****988888************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.6E-93065IPR010399Tify domain
PROSITE profilePS5132013.73065IPR010399Tify domain
PfamPF062001.7E-113364IPR010399Tify domain
PROSITE profilePS5101713.33491133IPR010402CCT domain
PfamPF062035.6E-1691133IPR010402CCT domain
SMARTSM004011.4E-11160218IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-12164214No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15165207IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
PfamPF003201.7E-14166202IPR000679Zinc finger, GATA-type
CDDcd002022.53E-15166208No hitNo description
PROSITE profilePS501149.275172217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEEAVDGEGV EGDAPADHGD LGNPHALVVP PVASNQLTLS FHREVYVFDS VSPEKVQAVL  60
LLLGGREIAT STASIESATN PLDKRLNFPH RVASLMRFKE KRKERNFDKK IRYAVRKEVA  120
LRMQRNRGQF TTSKSNPDVA TLGATNCEGT QCWGTIEGRP PSAALCHHCG INSKSTPMMR  180
RGPDGPRTLC NACGLMWANK GTLRDLSKNP SLLTQSDPLE GSEMNGASAP VAEELLPHAD  240
AANDHHSSSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390446.10.0PREDICTED: GATA transcription factor 20
SwissprotQ5Z4U51e-103GAT20_ORYSJ; GATA transcription factor 20
TrEMBLM0SC300.0M0SC30_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P05620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-73ZIM-like 1