PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P06190_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 283aa MW: 31377.6 Da PI: 4.7707

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P06190_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.7e-20	53	106	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ Fe ++++ e++ eLA+klgL+ rqV vWFqNrRa++k GSMUA_Achr3P06190_001 53 KKRRLSPEQVRLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 106 56689************************************************9 PP
2	HD-ZIP_I/II	132.1	2.1e-42	53	141	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++y +l +++++L ke+++Lr+ GSMUA_Achr3P06190_001 53 KKRRLSPEQVRLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLEHDFDRLKSSYGSLLSDHDSLLKENDRLRS 140 9*************************************************************************************98 PP HD-ZIP_I/II 90 e 90 + GSMUA_Achr3P06190_001 141 Q 141 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	18.301	48	108	IPR001356	Homeobox domain
SMART	SM00389	1.3E-19	51	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.38E-19	51	119	IPR009057	Homeodomain-like
Pfam	PF00046	1.6E-17	53	106	IPR001356	Homeobox domain
CDD	cd00086	1.31E-18	53	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-21	55	115	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-6	79	88	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-6	88	104	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.5E-15	108	145	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MLFATTDSGV FQITGARSAL AAAEGANKRR PFFTSPEELL EEEYYYDEQQ PDKKRRLSPE 60 QVRLLERSFE AENKLEPERK SELARKLGLQ PRQVAVWFQN RRARWKTKQL EHDFDRLKSS 120 YGSLLSDHDS LLKENDRLRS QAISLSFSPS LVISLTEKLQ SRTAASAGAA GIAGTKSDVQ 180 AAASVADPAT LAVQTKAEDR LSAGSGGSAV VDGEAAKQLV DSSEVSYFPE GYHCMGPVDG 240 GRVHSEEDDV SDEGCNYYSD GMFAAEHHHQ DEVDAQLDWW VWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	108	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391261.1	1e-167	PREDICTED: homeobox-leucine zipper protein HOX16-like
Swissprot	A2X980	1e-74	HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
Swissprot	Q6YWR4	1e-74	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	M0SC86	0.0	M0SC86_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P06190_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-49	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]