PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P06780_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 205aa MW: 22354.5 Da PI: 10.9319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P06780_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.2e-13	37	83	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP a ++l+Ka+ L ++v+ +++L GSMUA_Achr3P06780_001 37 RSHSEAERRRRQRINGHLATLRSLLPAA-----TRLDKAALLGEVVRQVREL 83 68************************.....9*******999988777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.466	34	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-10	37	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-9	37	88	No hit	No description
SuperFamily	SSF47459	4.58E-13	37	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-12	37	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-12	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	7.1E-4	118	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MLPVETGKAV RETRMENGGG DSTTLSTRTA AEVRAIRSHS EAERRRRQRI NGHLATLRSL 60 LPAATRLDKA ALLGEVVRQV RELRGRVEEV AVVVPGEGDE VGVEEGEESG GRVVRAWVCC 120 ADRPGLMGEL SRAVRSVRAR AVRVEMVTVG GRTRSLLELE VGEAEKGDGR SALQAALWAV 180 LLTNRAGPGE NYCKRARMST RFNRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392028.1	1e-140	PREDICTED: transcription factor AIG1-like
Refseq	XP_018678988.1	1e-140	PREDICTED: transcription factor AIG1-like
TrEMBL	M0SCE5	1e-138	M0SCE5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P06780_001	1e-139	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4114	35	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-12	bHLH family protein