PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P06800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25726.2 Da    PI: 8.8289
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P06800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.6e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+i+n+  rqvtfskRr g++KKA ELSvLCda+va+i+fsstgkl+e+++
  GSMUA_Achr3P06800_001  9 KKIDNTAARQVTFSKRRRGLFKKAAELSVLCDADVALIVFSSTGKLFEFCN 59
                           68***********************************************85 PP
2K-box55.42.6e-19901701898
                  K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            ++++a Lkk++ +   ++R++ Ge Le+L+++eLqqLe+ Le +l ++ ++K   +++qi+ lq+k  +l een +Lr+++
  GSMUA_Achr3P06800_001  90 NNNYASLKKQVAEASLQLRQMRGEALEKLTVEELQQLEKTLEAGLGRVMDRKGAQFTQQINSLQQKAAKLAEENVRLRRRV 170
                            6899**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.324161IPR002100Transcription factor, MADS-box
CDDcd002654.86E-40377No hitNo description
PRINTSPR004046.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-31374IPR002100Transcription factor, MADS-box
PfamPF003196.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.18186176IPR002487Transcription factor, K-box
PfamPF014861.4E-1791170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVREKIQIKK IDNTAARQVT FSKRRRGLFK KAAELSVLCD ADVALIVFSS TGKLFEFCNS  60
SMKKIIDKHS THSKNLEKHD QPFLDLNLDN NNYASLKKQV AEASLQLRQM RGEALEKLTV  120
EELQQLEKTL EAGLGRVMDR KGAQFTQQIN SLQQKAAKLA EENVRLRRRV LEMPNMGKQV  180
MADKDNVVNE DGQSSESVTN ASHSGGPQEC DDSSVTSLKL GYVDEVNKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-20173173MEF2C
5f28_B9e-20173173MEF2C
5f28_C9e-20173173MEF2C
5f28_D9e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391344.11e-161PREDICTED: MADS-box transcription factor 22-like
SwissprotQ9XJ662e-88MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLM0SCE71e-167M0SCE7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P06800_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]