PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P07310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28028.8 Da    PI: 8.9919
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P07310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-271059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstg+lye+ss
  GSMUA_Achr3P07310_001 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGRLYEFSS 59
                           8***********************************************96 PP
2K-box90.33.5e-3077170598
                  K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                            ++   ++++ + +q+e+a L+++++nLq+++R+l+Ge+L+ L++k+Lq+Le+qLe sl+++R kK++ll+e+i+el +k + +++en+
  GSMUA_Achr3P07310_001  77 QQIVSATSELKFWQREAASLRQQLHNLQENHRQLMGEELSGLNVKDLQNLENQLEMSLRNVRMKKDQLLIEEIQELDQKGRFIHQENM 164
                            3333688999****************************************************************************** PP

                  K-box  93 aLrkkl 98 
                            +L+kk+
  GSMUA_Achr3P07310_001 165 ELHKKV 170
                            ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.875161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002654.39E-45278No hitNo description
SuperFamilySSF554552.22E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.45486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKIVIRR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSS TGRLYEFSSS  60
SMKSVIERYT KAKEEQQQIV SATSELKFWQ REAASLRQQL HNLQENHRQL MGEELSGLNV  120
KDLQNLENQL EMSLRNVRMK KDQLLIEEIQ ELDQKGRFIH QENMELHKKV NLVRQENMEL  180
HKKVYETRGT TGSDGGSIIP YGFSFTDEAH VPIHLELSQP QQQADGTQTQ PPNLGLQLQL  240
TRGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20177177MEF2C
5f28_B1e-20177177MEF2C
5f28_C1e-20177177MEF2C
5f28_D1e-20177177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391396.11e-180PREDICTED: MADS-box transcription factor 23-like
RefseqXP_018679288.11e-180PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-123MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLM0SCJ81e-179M0SCJ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07310_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-107AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]