PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P07950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 238aa    MW: 26917.5 Da    PI: 6.1682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P07950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd +l  ++k +G g+W++ +++ g++R++k+c++rw++yl
  GSMUA_Achr3P07950_001 15 RGAWTAEEDGILEAYIKTHGEGRWRSLPKKAGLKRCGKSCRLRWLNYL 62
                           89********************************************97 PP
2Myb_DNA-binding51.32.7e-1668113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ + eE++l+++++k+ G++ W++Ia +++ gRt++++k++w++yl
  GSMUA_Achr3P07950_001  68 RGNISLEEEDLIIRLHKLIGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 113
                            78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6611062IPR017930Myb domain
SuperFamilySSF466894.49E-2912109IPR009057Homeodomain-like
SMARTSM007172.5E-131464IPR001005SANT/Myb domain
PfamPF002496.4E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-231669IPR009057Homeodomain-like
CDDcd001677.68E-101762No hitNo description
PROSITE profilePS5129425.58963117IPR017930Myb domain
SMARTSM007171.1E-1567115IPR001005SANT/Myb domain
PfamPF002497.4E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2570117IPR009057Homeodomain-like
CDDcd001671.33E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRKPCCAKE TDLKRGAWTA EEDGILEAYI KTHGEGRWRS LPKKAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ISLEEEDLII RLHKLIGNRW SLIAGRLPGR TDNEIKNYWN TYLRKKVQNQ  120
HEPAVVLSSL HHFVQVSREG DLVAVSEAEK APESVPGESF SILTEGNWWD LLMSSDAGEA  180
ASAVQVPHLN LVSLCGDDSR CDLYAANEGM LEDWMCDPAQ TSLDRELESL ARFLHCDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391460.11e-176PREDICTED: myb-related protein Hv1-like
TrEMBLM0SCR21e-175M0SCR2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07950_0011e-176(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-60myb domain protein 5