PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 184aa    MW: 20788.6 Da    PI: 9.4689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1852100355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+G+r ++ +g+W+AeIrdp+    +  r++lg+f taeeAa+a+++ +++++g
  GSMUA_Achr3P08170_001  52 YRGIRHRP-WGKWAAEIRDPV----KgVRVWLGTFATAEEAARAYDREARRIRG 100
                            9****888.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2251109IPR016177DNA-binding domain
PROSITE profilePS5103223.28851108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3151109IPR001471AP2/ERF domain
SMARTSM003801.3E-3551114IPR001471AP2/ERF domain
PfamPF008471.6E-1052100IPR001471AP2/ERF domain
CDDcd000184.39E-2952107No hitNo description
PRINTSPR003671.8E-115263IPR001471AP2/ERF domain
PRINTSPR003671.8E-117490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MCGGAIISDL ISPRDNTHRP STSVFWPDCT DCHCIPPPLE KVQRKRERKN LYRGIRHRPW  60
GKWAAEIRDP VKGVRVWLGT FATAEEAARA YDREARRIRG KKAKVNFPND DPLPNPPRRR  120
PAATVSSYEA RWLSDQPTTA AAHASYTMNL YEVPYMESVV PSTGPPGMEM LWSFDDVTPS  180
SAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2252108663ATERF1
3gcc_A8e-2252108663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391493.11e-135PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLM0SCT41e-133M0SCT4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08170_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-27ERF family protein