PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 197aa    MW: 20606.7 Da    PI: 4.9977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.51.2e-2151100255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+G+r+++ +g+W+AeIrdp++     r++lg++gtaeeAa+a++ a+++++g
  GSMUA_Achr3P08180_001  51 LYRGIRRRP-WGKWAAEIRDPRK---GSRVWLGTYGTAEEAARAYDVAAREIRG 100
                            69*******.**********954...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-3050109No hitNo description
SMARTSM003804.6E-3851114IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2351108IPR016177DNA-binding domain
PfamPF008471.8E-1551100IPR001471AP2/ERF domain
PROSITE profilePS5103224.92251108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3352109IPR001471AP2/ERF domain
PRINTSPR003671.4E-115263IPR001471AP2/ERF domain
PRINTSPR003671.4E-117490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MCGGAIISDF VTAVEDLDLT PGGNPPPRHD EEGEGTKTGA AGGGQRRRKT LYRGIRRRPW  60
GKWAAEIRDP RKGSRVWLGT YGTAEEAARA YDVAAREIRG SKAKLNFPNP SDYAAAAAAA  120
AAAAAAEPPT KRRAAAWAEE ESSASCSASL EEGLRERISS LEALLGLEHE ESSVAAASAG  180
EGSETSSADL CGDLCFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-22521091573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449QRRRKT
24657RRKTLYRGIRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391494.11e-137PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222598e-38ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLM0SCT51e-136M0SCT5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08180_0011e-137(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-25ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]