PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P08500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

M-type_MADS

Protein Properties

Length: 230aa MW: 26464.5 Da PI: 8.8188

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P08500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58	1.2e-18	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r tf kRr+g++KK +ELS+LCd+++++i+++++ GSMUA_Achr3P08500_001 11 IANDSTRRATFKKRRKGLMKKVSELSTLCDVKACMIVYGPQ 51 89*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.857	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-23	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.21E-32	2	85	No hit	No description
SuperFamily	SSF55455	1.19E-24	3	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.4E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-18	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.4E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.4E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MARKKVNLAW IANDSTRRAT FKKRRKGLMK KVSELSTLCD VKACMIVYGP QEPHPEVWPS 60 VPEATRVLAR FKSMPEMEQC KKMMNQEGFL RQRVAKLQEQ LRKQARENRE LEVALLVHEG 120 LAGRSLDDVS IEDATSLAWM VEMKAKVVHD RIERVRKEHV ASALRTAETT VATREKTPVE 180 AAMEALQRQD WFMEVMNPND HNVMFGGGDE TIPSYIDHSS PWLDPYYPLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVNLAWIANDSTRRATFKKRR
2	21	25	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392051.1	1e-173	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	5e-43	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	M0SCW7	1e-171	M0SCW7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P08500_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-45	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]