PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 425aa    MW: 45854.8 Da    PI: 8.5786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.2e-125981527
                           --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                            C +++rtGtC+yG++C+++H++
  GSMUA_Achr3P08970_001 59 DCAYYMRTGTCSYGEKCRYNHPR 81
                           7********************96 PP
2zf-CCCH375.5e-12103127327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C f++rtG Ck+G++Ck++H++
  GSMUA_Achr3P08970_001 103 QPVCEFYMRTGNCKFGSTCKYHHPR 127
                            689********************96 PP
3zf-CCCH30.65.8e-10148173227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C ++++tG+Ck+G +CkF+H++
  GSMUA_Achr3P08970_001 148 GEKECAYYMKTGQCKFGFTCKFHHPQ 173
                            7899********************97 PP
4zf-CCCH36.67.5e-12304330127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+f+++tG CkyG+ Ck++H+p
  GSMUA_Achr3P08970_001 304 PGQPECQFYMKTGDCKYGAMCKYHHPP 330
                            5789*********************97 PP
5zf-CCCH30.37.3e-10353375426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +C ++++ G Ck+G +CkF H+
  GSMUA_Achr3P08970_001 353 QPCTYYMQHGLCKFGQTCKFDHP 375
                            69********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-55481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3245482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65882IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-95981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-56081IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-6100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704100128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5105127IPR000571Zinc finger, CCCH-type
SMARTSM003560.001146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258146174IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-8148173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5148174IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657303331IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5307331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774349377IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-5349376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6352378IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7353375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4353374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MELYGRGPAP GGARPDPDTG LEGKLFGSFV IIPLSSVLSG SGGGSGGTLQ YPERPGELDC  60
AYYMRTGTCS YGEKCRYNHP RDRGAMTGAG RTGAMEYPER VDQPVCEFYM RTGNCKFGST  120
CKYHHPRQGG GSAQPVSLNY CGYPLRPGEK ECAYYMKTGQ CKFGFTCKFH HPQPGGSSVP  180
SPASAFYPTV QHPSVPPPHQ YPPYAGWQVA RPSVLPGSYL QGSYAPMLLS PGVVPVQGWN  240
PYTGPVNSSV SPAGQQTVQP GPIYGVQNQA SSTNPALAGA QTPTLSPAGT LTTSQRENKF  300
PERPGQPECQ FYMKTGDCKY GAMCKYHHPP DWRIPRMNVV LSALGLPLRP GAQPCTYYMQ  360
HGLCKFGQTC KFDHPISTVS YSSSASSLSD MPVPYPIGFS VATLAPSSSS SELRPEFISI  420
KERFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391577.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW21e-158C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLM0SD140.0M0SD14_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-119C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]