PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P09190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 807aa    MW: 91977.5 Da    PI: 7.3071
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P09190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.41.5e-36112188177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cqv+gCead+se+k yh+rh+vC  ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k 
  GSMUA_Achr3P09190_001 112 RCQVPGCEADISELKGYHKRHRVCLRCANSSSVVLDGEHKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNKRRRRKP 188
                            6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-28106174IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.735110187IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-33111190IPR004333Transcription factor, SBP-box
PfamPF031105.6E-27113187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MWEWGSLFDF TDVDEDPLIL PWGTSDEAQT LPPLSTAELS SLPLPFAEPA PSGIEDGMGR  60
VRKRDARLVC PNYLAGRVPC SCPEEDEEAM QEVAVAGPRK RSRKGGASRV VRCQVPGCEA  120
DISELKGYHK RHRVCLRCAN SSSVVLDGEH KRYCQQCGKF HVLPDFDEGK RSCRRKLERH  180
NKRRRRKPND LNSIVEKETD TQEDSLPDVS FDGEPMKGFV SYLSSIKIRH IWLCFSSWYK  240
IHFQQRSIPT FTNNNKKHVN MPILAVKLVL IQSILRCFST DPAYFIWFSV NLGDFRSLKE  300
KKREKLVNPD LKPLDYNKSL DGEPLAESED GGGSPTGSLP SLKNDDIVIS REAKKDERIT  360
NSKSALSSSF CEKKSTYSSL CPTGRISFKL YDWNPAEFPR RLRHQIFQWL ANMPVELEGY  420
IRPGCTILTV FIAMPQSMWD KLSQNVAHYV RDLINTPESL LRGRGTIFVY LGNMIIHVLQ  480
DGATLTNIKM EVQAPRLHYV YPFYFEAGKP MEFVACGSNL EQPKFRFLVS FAGKYLKYDS  540
FHVISTGKSR YLDGNKAVCI NNSEHEMFRI KVTHLDSEVF GPAFIEVENA AGISNYIPVL  600
VANKQICSEL ERMEEPVVDS CYASHIMSQN FIANSSPGFC EILASRQSAM SALLLDIAWL  660
LKAPYLEEKE AFWSFTNVQR LTSMLKFLLQ NELFSVLQAI MHHLDNIILT EGFDKPDNWT  720
SDVDQKLYDD FLNHVREILY QRTLNDTRLT EPKIPLCGLL MPQTSQKTSM CAKNYTNQVS  780
YVVCFCVILV DCLVPMFFAS MFSQPYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-47110190383squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169187KRSCRRKLERHNKRRRRKP
2173185RRKLERHNKRRRR
3180187NKRRRRKP
4181186KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391600.20.0PREDICTED: squamosa promoter-binding-like protein 9
SwissprotQ6I5761e-127SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLM0SD360.0M0SD36_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P09190_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-109squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]