PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P09490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 319aa    MW: 35438.4 Da    PI: 7.7185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P09490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-1780125147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l ++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr3P09490_001  80 RGHWRPAEDTRLRQLVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 125
                            899*****************************.***********996 PP
2Myb_DNA-binding56.47e-18132175146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++++eE+++l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr3P09490_001 132 RRAFSEEEEKRLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 175
                            678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.76175126IPR017930Myb domain
SMARTSM007171.0E-1379128IPR001005SANT/Myb domain
PfamPF002495.9E-1680125IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-2880173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2581133IPR009057Homeodomain-like
CDDcd001671.68E-1283124No hitNo description
PROSITE profilePS5129426.587127181IPR017930Myb domain
SMARTSM007172.4E-15131179IPR001005SANT/Myb domain
PfamPF002492.5E-15132174IPR001005SANT/Myb domain
CDDcd001675.74E-12134174No hitNo description
Gene3DG3DSA:1.10.10.602.5E-20134180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASNELKATA DMGFFPPPLP PFPGALGSPF GERECKGVEQ GWVFQISRWG GQEHHGGEED  60
EGGGNSTTHE SVQHHKLCAR GHWRPAEDTR LRQLVSQYGP QNWNLIAEKL EGRSGKSCRL  120
RWFNQLDPRI NRRAFSEEEE KRLLAAHRLY GNKWALIARL FPGRTDNAVK NHWHVIMARK  180
HREQSNDESA STCTTDLSLN SFSTITSVVG PSSLSRHNPP PYQTHLHDLV NGYGEKVLSA  240
GNQCHQKSDD PGSGFLPNGG APIRWFPGFD QSGSSANPEI SAKGTVDYHM SKAWLQGETT  300
YGREKISLPF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-32801804104C-Myb DNA-Binding Domain
1msf_C3e-32801804104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391642.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ5NBM88e-71CSA_ORYSJ; Transcription factor CSA
TrEMBLM0SD660.0M0SD66_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P09490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-70myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]