PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P10100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 282aa    MW: 30395 Da    PI: 6.8804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P10100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-1958107255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aaka+++a++ l+g
  GSMUA_Achr3P10100_001  58 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAAKAYDRAALVLYG 107
                            59****999.**********954...5**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-2058115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-2958115IPR001471AP2/ERF domain
PROSITE profilePS5103222.56358115IPR001471AP2/ERF domain
PfamPF008471.4E-1258107IPR001471AP2/ERF domain
CDDcd000184.29E-3158115No hitNo description
SMARTSM003803.4E-3558121IPR001471AP2/ERF domain
PRINTSPR003672.2E-105970IPR001471AP2/ERF domain
PRINTSPR003672.2E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDHKLSSPIE QYQLAFQCSS SATSTNTISE AAAGGDGPTA SSGRKGKGKG GPENRKFRYR  60
GVRQRSWGKW VAEIREPRKR TRKWLGTFST AEDAAKAYDR AALVLYGPRA QLNLQRPSTA  120
AAGHHLNVTA TTSYSSSTTT LRPILPRPST IHFPVLPHPN IPTSNTYPPL FLHADMTSSP  180
IVAPEPVVEP PSVEVETVAA ASEPAVMSGP IHPSFSDPTA FKEINSFAGS MTSSFSVSCP  240
PVMTTESSGS APLVSSPLWG YDDYDVEASC LWDDTDPFFF DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1759114359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1759114662ATERF1
3gcc_A3e-1759114662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392069.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLM0SDC70.0M0SDC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P10100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-25ERF family protein