PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P10600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 461aa MW: 49571.1 Da PI: 6.3749

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P10600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	289	337	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + sk Ka++L + ++Y++sLq GSMUA_Achr3P10600_001 289 NSHSLAERVRREKINERMKLLQDLVPGC----SKVTGKAMMLDEIINYVQSLQ 337 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.09E-12	284	341	No hit	No description
SuperFamily	SSF47459	7.85E-18	284	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.139	286	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-18	287	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-9	289	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MDMHGKDGCN SLKNEDNLDY NYSGNSSDWQ QCNPSIGCLD SGNPSAAVSQ GNQIGSTPCS 60 SISMADPFSA GLWNLSTEST SLDLCKDKLQ GSSNQITGNS MSVGGTLLQT GSGVLHQSLS 120 HFPSDSAFIE RAARFSCFGG SDLGGLMNPY SAAQSQSPHS NASRESSGAQ IQKNEINMME 180 AVRGGSLSTT DHGSKEKDNS HAAGNSSSTL PAAMKRKRPS EDMALDQAKV ASQISGEMDD 240 DNMELEKKAE HNSSTAATSK PGGKQVKDSN ESSKEDFIHI RARRGQATNS HSLAERVRRE 300 KINERMKLLQ DLVPGCSKVT GKAMMLDEII NYVQSLQQQV EFLSMKLAAI NPRLDIDIEA 360 VLSKYLLQTC NGPSAAMGSS SGIVRPPPLH PSQQGLAQAG LSGNVNLPDL FRRSINAQMT 420 APQGYKEPKM QVPNAWDEEL HNVMQMAYNG TVNLNTHRVQ Q

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MDMHGKDGCN SLKNEDNLDY NYSGNSSDWQ QCNPSIGCLD SGNPSAAVSQ GNQIGSTPCS  60
SISMADPFSA GLWNLSTEST SLDLCKDKLQ GSSNQITGNS MSVGGTLLQT GSGVLHQSLS  120
HFPSDSAFIE RAARFSCFGG SDLGGLMNPY SAAQSQSPHS NASRESSGAQ IQKNEINMME  180
AVRGGSLSTT DHGSKEKDNS HAAGNSSSTL PAAMKRKRPS EDMALDQAKV ASQISGEMDD  240
DNMELEKKAE HNSSTAATSK PGGKQVKDSN ESSKEDFIHI RARRGQATNS HSLAERVRRE  300
KINERMKLLQ DLVPGCSKVT GKAMMLDEII NYVQSLQQQV EFLSMKLAAI NPRLDIDIEA  360
VLSKYLLQTC NGPSAAMGSS SGIVRPPPLH PSQQGLAQAG LSGNVNLPDL FRRSINAQMT  420
APQGYKEPKM QVPNAWDEEL HNVMQMAYNG TVNLNTHRVQ Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391757.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_018678894.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	M0SDH7	0.0	M0SDH7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P10600_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-70	bHLH family protein