PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P10670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 237aa MW: 25678.9 Da PI: 9.6896

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P10670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.9e-39	36	95	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+stntkfCyynny+lsqPr+fC++CrryWtkGG lrn+PvGgg+rk+k+ s GSMUA_Achr3P10670_001 36 QQPVKCPRCESTNTKFCYYNNYNLSQPRHFCRSCRRYWTKGGVLRNIPVGGGCRKSKRPS 95 7899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	36	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-33	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MQDFHPLPGR VFCGGGRAGA ELRRLVGYPG AAVVQQQPVK CPRCESTNTK FCYYNNYNLS 60 QPRHFCRSCR RYWTKGGVLR NIPVGGGCRK SKRPSSSSSK SSSKPPPAAA DKEHQRRRLP 120 SSASRCSSES TNLTVATTFA APFPGQALLN SQISISNPNP PFESPLQVDP PLLIRLEFIG 180 QTATSAPRSI SGGGGLAALD WSGPVDPTLF DLTTTVDPTA YWNQSHWADA DPTIYLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662917	2e-59	KP662917.1 Cajanus cajan Dof25 (Dof25) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391773.1	1e-146	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	M0SDI4	1e-174	M0SDI4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P10670_001	1e-174	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	8e-31	DOF zinc finger protein 1