PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P11050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 341aa    MW: 38069.9 Da    PI: 7.4833
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P11050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05261283123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  + + ++H +++
  GSMUA_Achr3P11050_001 261 FMCRKCGKAFAVRGDWRTHEKNC 283
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-5173199No hitNo description
SMARTSM003550.58177199IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-6177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-6242281No hitNo description
Gene3DG3DSA:3.30.160.609.4E-6257281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808261281IPR007087Zinc finger, C2H2
SMARTSM0035549261281IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADPFTNFFK VIQTHYLFSG NPSPPPVAIT SDLYHGHTNT YLPPQTPSPP LREALPLLRL  60
SPSRHQGRED NNSCTAFGEG GKDKAMVTDG EVDADAVTVA LHIGPPSPCA VDLISRISST  120
SEDNIGRKEG EGSDDDDDDD DDDVVPLGYP SNPIGRINKG QYWIPTPSQI LLGPTQFSCP  180
VCCKTFNRYN NMQMHMWGHG SQYRKGPESL RGIQPTAMLR LPCYCCSPGC PNNIDHPRSK  240
PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS  300
LKDHIKSFGR GHAAYGINCL EEEEEPLSEI EQDGVQSHKG R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391814.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-129ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM0SDM20.0M0SDM2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P11050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]