PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P11170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 388aa    MW: 41307.9 Da    PI: 9.0411
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P11170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.22e-3742114176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC++dl+ +k y+ rhkvC +hskap+v+v+gleqrfCqq   fh+lsefD++krsCrrrLa+hnerrrk+
  GSMUA_Achr3P11170_001  42 RCQVEGCNVDLTGVKAYYCRHKVCGMHSKAPKVVVAGLEQRFCQQ---FHQLSEFDQGKRSCRRRLAGHNERRRKP 114
                            6*******************************************9...**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.9E-3135101IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.28240114IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3541118IPR004333Transcription factor, SBP-box
PfamPF031103.8E-2843113IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDSSSLKASG ALSGASDALH GLKFGQKIYF DDGGGGGQQP PRCQVEGCNV DLTGVKAYYC  60
RHKVCGMHSK APKVVVAGLE QRFCQQFHQL SEFDQGKRSC RRRLAGHNER RRKPPPGPFA  120
SRYGRLASSV HEDPSRFRSF LMDFSYPYLS STARNLWPTA RAGDRVASNE WHVAFDTSPG  180
AAAMHGTHAC YQGPPAATFC SPMEFPPGEC LGGVSDSSCA LSLLSTHPWS SNSARNRAPA  240
IAPSSSTFDG PPMAQSAVPD NYGTSSWGLR GHGSRTSSHE IQHAAGLAGA TEASDAHFSG  300
QVELALQENG QCLDHGSARS YGHSSLGMHW SLRTSRKREP PTSGGVFTSC GNKSLRVASP  360
TPSPGGRRFV SGVNQGLLAS VHLYHGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-25431131184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391832.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotA3C0576e-85SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLM0SDN40.0M0SDN4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P11170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.14e-46squamosa promoter binding protein-like 15